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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
14
ATAC-seq
11
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
14
DNA accessibility
11
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
8
February, 2021
8
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
Available data
116
bam
94
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
96
Homo sapiens
Biosample type
96
tissue
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
66
hg19
62
GRCh38
Lab
96
AMP-T2D consortium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
acetabular part of hip bone
1
1
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