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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
Assay category
59
DNA binding
9
Transcription
8
DNA methylation
6
3D chromatin structure
2
DNA accessibility
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
26
August, 2017
10
July, 2019
10
June, 2019
8
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
1
October, 2017
Available data
84
bigWig
81
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
86
Homo sapiens
Biosample type
73
tissue
13
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
52
hg19
35
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
spleen
20
2
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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