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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
ChIP-seq
5
pCHi-C
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
3
June, 2019
1
February, 2020
1
July, 2019
March, 2020
1
May, 2021
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
58
Homo sapiens
Biosample type
54
tissue
4
primary cell
Organ
903
pancreas
775
liver
655
connective tissue
497
epithelium
484
adipose tissue
356
heart
274
kidney
249
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
57
musculature of body
41
nerve
34
embryo
23
spleen
19
lung
19
vein
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
57
AMP
1
T1D
Genome assembly (visualization)
30
hg19
2
GRCh38
Lab
57
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bed bed3+
month_released!
March, 2020
BIOSAMPLE
ASSAY
58 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
thymus
1
primary cell
retinal pigment epithelial cell
3
1
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