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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
46
ATAC-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
RRBS
Assay category
102
DNA binding
47
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
71
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
22
control
9
transcription factor
5
RNA binding protein
Date released
50
May, 2019
43
October, 2019
35
February, 2023
14
February, 2021
6
November, 2017
5
July, 2019
2
March, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
tsv
17
bed broadPeak
17
bigBed broadPeak
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
155
Homo sapiens
Biosample type
114
tissue
27
primary cell
14
cell line
Organ
604
liver
500
pancreas
347
epithelium
252
kidney
225
brain
179
connective tissue
155
heart
155
vasculature
151
blood vessel
101
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
52
eye
36
nerve
23
spleen
20
embryo
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
155
AMP
Genome assembly (visualization)
122
GRCh38
95
hg19
Lab
155
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
tsv
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
coronary artery
5
36
tibial artery
23
1
thoracic aorta
16
1
aorta
13
1
2
ascending aorta
16
primary cell
endothelial cell of umbilical vein
17
2
1
choroid plexus epithelial cell
3
1
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
8
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