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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
2
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
2
3D chromatin structure
2
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
19
October, 2019
6
November, 2017
3
July, 2019
1
March, 2020
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
29
Homo sapiens
Biosample type
128
tissue
66
cell line
29
primary cell
Organ
385
epithelium
346
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
29
AMP
Genome assembly (visualization)
24
hg19
16
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
1
choroid plexus epithelial cell
3
1
brain microvascular endothelial cell
3
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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