Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
33
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
23
August, 2017
10
July, 2019
8
June, 2019
6
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
45
tissue
11
primary cell
Organ
866
pancreas
671
liver
623
connective tissue
473
epithelium
461
adipose tissue
303
heart
264
kidney
220
brain
201
vasculature
198
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
56
musculature of body
30
nerve
28
embryo
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
39
hg19
20
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
files.file_type!
bed bed3+
target.investigated_as!
control
BIOSAMPLE
ASSAY
56 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
muscle of leg
6
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
Download