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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
17
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
other post-translational modification
2
narrow histone mark
Date released
7
December, 2018
7
January, 2019
5
November, 2018
1
March, 2020
1
October, 2017
Available data
21
bam
21
fastq
13
bigWig
11
bed narrowPeak
10
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
21
Homo sapiens
Biosample type
21
tissue
Organ
917
pancreas
776
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
21
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
12
GRCh38
10
hg19
Lab
21
AMP-T2D consortium
files.file_type!
bed bed3+
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
17
2
1
1
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