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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
723
ChIP-seq
Assay category
723
DNA binding
Target of assay
723
histone modification
722
histone
480
transcription factor
373
narrow histone mark
348
broad histone mark
299
control
97
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
149
August, 2017
89
May, 2019
85
November, 2017
60
April, 2019
30
October, 2018
27
May, 2020
22
May, 2021
21
December, 2017
17
August, 2021
16
February, 2018
12
October, 2017
10
November, 2019
7
January, 2019
3
March, 2020
Available data
604
bigWig
600
bed narrowPeak
582
bam
344
bigBed narrowPeak
223
tagAlign
157
fastq
49
bed broadPeak
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
717
Homo sapiens
Biosample type
581
tissue
primary cell
104
in vitro differentiated cells
38
cell line
Organ
184
brain
100
liver
81
pancreas
70
connective tissue
60
heart
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
27
epithelium
25
musculature of body
24
nerve
20
artery
20
kidney
10
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
719
AMP
4
T1D
Genome assembly (visualization)
549
GRCh38
532
hg19
Lab
700
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
20
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
biosample_type!
primary cell
BIOSAMPLE
ASSAY
723 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
39
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
+ See 99 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
8
+ See 6 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
See all biosamples
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