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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
18
February, 2021
17
May, 2021
9
April, 2020
4
March, 2023
3
October, 2022
2
March, 2020
Available data
132
fastq
93
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
312
Homo sapiens
Biosample type
243
primary cell
64
tissue
7
cell line
2
stem cell
Organ
110
pancreas
103
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
227
HPAP
47
KPMP
29
T1D
9
LungMap
4
community
Genome assembly (visualization)
189
hg19
GRCh38
Lab
227
Klaus Kaestner, Upenn
47
KPMP
27
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
bed bed3
assembly!
GRCh38
award.project!
AMP
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
316 results
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single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
CD4-positive, alpha-beta T cell
2
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tissue
kidney
47
lung
9
islet of Langerhans
7
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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