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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
104
total RNA-seq
9
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
346
DNA binding
104
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
91
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
463
bam
454
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
463
Homo sapiens
Biosample type
1819
tissue
535
primary cell
463
cell line
265
in vitro differentiated cells
3
stem cell
Organ
267
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
459
AMP
4
T1D
Genome assembly (visualization)
529
hg19
463
GRCh38
Lab
463
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
463 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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