Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
48
ATAC-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
204
DNA binding
48
DNA accessibility
1
3D chromatin structure
Target of assay
195
histone
195
histone modification
100
narrow histone mark
95
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
42
August, 2017
23
June, 2019
20
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
October, 2018
1
February, 2021
1
March, 2023
Available data
525
bam
519
bigWig
261
bed narrowPeak
252
tsv
229
fastq
105
bigBed narrowPeak
98
tagAlign
45
bed broadPeak
45
bigBed broadPeak
bed bed3+
bed bed3
1
hic
Organism
505
Homo sapiens
Biosample type
1655
tissue
505
primary cell
461
cell line
246
in vitro differentiated cells
Organ
206
epithelium
192
pancreas
25
connective tissue
18
kidney
16
vasculature
14
blood vessel
10
musculature of body
10
vein
9
brain
7
heart
6
liver
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
314
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
597
hg19
505
GRCh38
Lab
314
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
33
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3
bed bed3+
BIOSAMPLE
ASSAY
505 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
+ See 69 more…
See all biosamples
Download