Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
22
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
DNA binding
162
Transcription
27
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Date released
143
May, 2020
20
May, 2022
9
July, 2019
5
December, 2019
5
January, 2019
3
November, 2018
2
August, 2017
2
June, 2019
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2021
Available data
189
bigWig
170
bam
162
tsv
28
bed narrowPeak
10
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
bed bed3
1
hdf5
Organism
195
Homo sapiens
Biosample type
178
tissue
10
primary cell
7
cell line
Organ
507
connective tissue
495
pancreas
407
adipose tissue
210
epithelium
195
liver
114
heart
90
kidney
86
vasculature
83
blood vessel
68
artery
66
bone element
48
limb
46
musculature of body
40
brain
32
eye
18
ureter
14
embryo
8
skeleton
7
nerve
5
vein
2
pericardium
2
spleen
1
blood
1
bodily fluid
Project
195
AMP
Genome assembly (visualization)
195
hg19
170
GRCh38
Lab
174
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
195 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
tissue
liver
147
20
2
1
1
1
right lobe of liver
2
1
1
2
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
5
1
1
Download