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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
158
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
424
DNA binding
161
Transcription
26
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
78
histone modification
78
recombinant protein
77
histone
55
RNA binding protein
50
narrow histone mark
27
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
August, 2017
20
May, 2022
18
August, 2021
9
July, 2019
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
1
February, 2021
Available data
611
bigWig
578
bam
431
bed narrowPeak
390
fastq
354
bigBed narrowPeak
161
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
bed bed3
1
hdf5
Organism
617
Homo sapiens
Biosample type
329
cell line
262
tissue
14
in vitro differentiated cells
12
primary cell
Organ
650
pancreas
617
liver
580
connective tissue
425
adipose tissue
284
epithelium
180
heart
128
vasculature
122
blood vessel
107
kidney
85
brain
73
musculature of body
72
artery
66
bone element
55
blood
55
bodily fluid
44
limb
34
eye
29
embryo
18
ureter
14
spleen
8
skeleton
2
pericardium
1
vein
Project
617
AMP
Genome assembly (visualization)
617
hg19
523
GRCh38
Lab
582
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3
month_released!
October, 2019
BIOSAMPLE
ASSAY
617 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
tissue
liver
78
146
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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