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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
136
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
181
DNA binding
138
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
34
December, 2017
26
February, 2021
11
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
274
bam
242
bigWig
131
tsv
124
fastq
115
bed narrowPeak
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
372
Homo sapiens
Biosample type
2726
tissue
1082
primary cell
635
cell line
372
in vitro differentiated cells
8
stem cell
Organ
86
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
372
AMP
Genome assembly (visualization)
275
hg19
248
GRCh38
4
hg18
Lab
318
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
files.file_type!
bed bed3
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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