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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
98
total RNA-seq
16
pCHi-C
8
snATAC-seq
Assay category
114
DNA binding
98
Transcription
8
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
control
Date released
183
May, 2021
45
May, 2020
8
January, 2021
Available data
212
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
236
Homo sapiens
Biosample type
236
primary cell
52
tissue
42
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
204
T1D
32
AMP
Genome assembly (visualization)
212
hg19
180
GRCh38
Lab
491
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
files.file_type!
bed bed3
target.investigated_as!
control
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
30
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
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