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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
956
histone modification
955
histone
482
narrow histone mark
472
broad histone mark
465
transcription factor
339
control
105
RNA binding protein
88
recombinant protein
24
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
January, 2019
5
November, 2018
3
August, 2017
3
December, 2017
2
December, 2018
Available data
24
bam
24
bed narrowPeak
24
bigWig
24
fastq
22
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
24
Homo sapiens
Biosample type
18
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
17
liver
4
blood
4
bodily fluid
2
connective tissue
1
epithelium
Project
24
AMP
Genome assembly (visualization)
24
GRCh38
24
hg19
Lab
24
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent control run_type
files.file_type!
bed bed3
month_released!
January, 2019
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
cell line
HepG2
14
GM12878
4
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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