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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
917
histone modification
916
histone
491
transcription factor
462
narrow histone mark
453
broad histone mark
309
control
100
RNA binding protein
89
recombinant protein
29
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
15
November, 2017
7
November, 2018
January, 2019
3
August, 2017
2
December, 2017
2
December, 2018
Available data
29
bam
29
bed narrowPeak
29
bigWig
29
fastq
27
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
29
Homo sapiens
Biosample type
24
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
23
liver
4
blood
4
bodily fluid
2
connective tissue
epithelium
Project
29
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3
month_released!
January, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
cell line
HepG2
20
GM12878
4
in vitro differentiated cells
adipocyte
2
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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