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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
26
total RNA-seq
19
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
72
DNA binding
27
Transcription
19
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
10
control
2
RNA binding protein
2
chromatin remodeller
Date released
713
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
200
May, 2022
195
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
119
fastq
117
bam
107
bigWig
81
bed narrowPeak
49
bigBed narrowPeak
26
tsv
2
bed bed3+
1
csv
Organism
119
Homo sapiens
Biosample type
78
primary cell
28
cell line
13
tissue
Organ
83
pancreas
66
epithelium
27
blood
27
bodily fluid
7
spleen
1
liver
Project
119
AMP
Genome assembly (visualization)
109
GRCh38
109
hg19
Lab
119
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
32
missing controlled_by
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
6
pancreatic alpha cell
10
5
pancreatic acinar cell
8
2
4
pancreatic endocrine cell
11
+ See 1 more…
cell line
GM12878
27
HepG2
1
tissue
spleen
7
islet of Langerhans
6
See all biosamples
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