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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
6
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
400
Transcription
6
DNA binding
4
DNA accessibility
Target of assay
5
RNA binding protein
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
12
July, 2019
5
October, 2018
2
August, 2017
2
February, 2020
1
June, 2019
1
March, 2020
1
November, 2018
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
411
Homo sapiens
Biosample type
409
tissue
2
primary cell
Organ
532
liver
508
pancreas
506
connective tissue
411
adipose tissue
262
heart
232
epithelium
153
brain
151
vasculature
147
blood vessel
128
kidney
91
limb
83
artery
58
bone element
56
musculature of body
54
blood
54
bodily fluid
31
nerve
18
ureter
14
embryo
14
spleen
13
vein
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
411
AMP
Genome assembly (visualization)
408
hg19
407
GRCh38
Lab
411
AMP-T2D consortium
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
411 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
adipose tissue
381
1
1
1
omental fat pad
5
3
1
2
subcutaneous adipose tissue
7
2
1
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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