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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
49
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
RNA binding protein
10
chromatin remodeller
6
control
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
11
January, 2019
8
January, 2021
1
January, 2018
Available data
49
bam
49
fastq
44
bigWig
43
bed narrowPeak
43
bigBed narrowPeak
Organism
58
Homo sapiens
Biosample type
50
cell line
8
primary cell
Organ
786
pancreas
630
liver
590
connective tissue
454
adipose tissue
423
epithelium
321
kidney
285
heart
160
vasculature
156
blood vessel
155
bone element
120
artery
95
brain
73
limb
63
musculature of body
58
blood
58
bodily fluid
57
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
12
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
8
T1D
Genome assembly (visualization)
44
hg19
43
GRCh38
Lab
50
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bed3
target.investigated_as!
RNA binding protein
histone
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
49
1
primary cell
peripheral blood mononuclear cell
8
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