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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
17
ChIP-seq
8
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
17
DNA binding
11
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
66
February, 2021
21
October, 2019
4
February, 2023
1
March, 2020
1
May, 2021
Available data
86
bam
73
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
93
Homo sapiens
Biosample type
70
tissue
23
primary cell
Organ
865
pancreas
789
liver
659
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
282
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
92
AMP
1
T1D
Genome assembly (visualization)
83
hg19
78
GRCh38
Lab
92
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
93 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone tissue
58
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
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