Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
45
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
377
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
April, 2018
6
May, 2022
5
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
310
bam
306
tsv
304
bigWig
184
fastq
6
txt
Organism
377
Homo sapiens
Biosample type
289
tissue
81
primary cell
7
cell line
Organ
377
pancreas
189
liver
105
epithelium
60
kidney
25
connective tissue
20
heart
19
eye
17
brain
14
embryo
12
adipose tissue
9
blood vessel
9
vasculature
7
limb
6
musculature of body
5
nerve
4
artery
4
bone element
4
skeleton
1
pericardium
1
spinal cord
Project
315
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
304
GRCh38
304
hg19
Lab
311
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
files.file_type!
bed bed3
month_released!
February, 2021
BIOSAMPLE
ASSAY
377 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
pancreas
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
7
Download