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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
total RNA-seq
1
ATAC-seq
1
GRO-seq
Assay category
23
DNA binding
1
DNA accessibility
Target of assay
13
histone
13
histone modification
9
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
9
February, 2018
2
October, 2019
1
January, 2018
Available data
23
bam
23
fastq
16
bigWig
15
bed narrowPeak
3
bed bed3+
1
tagAlign
Organism
25
Homo sapiens
Biosample type
23
in vitro differentiated cells
2
tissue
Organ
601
liver
549
pancreas
393
epithelium
321
heart
294
kidney
268
brain
204
connective tissue
175
vasculature
169
blood vessel
115
limb
93
adipose tissue
93
bone element
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bed bed3
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
25 results
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Clear Filters
ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
islet of Langerhans
1
pituitary gland
1
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