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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
9
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
60
DNA binding
17
DNA accessibility
4
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2021
8
January, 2021
4
February, 2023
1
January, 2018
Available data
68
bam
62
bed narrowPeak
60
fastq
55
bigWig
54
bigBed narrowPeak
bed bed3
4
txt
Organism
81
Homo sapiens
Biosample type
61
cell line
12
tissue
8
primary cell
Organ
946
pancreas
790
liver
678
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
285
brain
236
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
8
T1D
Genome assembly (visualization)
63
hg19
62
GRCh38
Lab
73
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
60
1
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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