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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
20
DNase-seq
19
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
24
DNA accessibility
19
DNA binding
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
19
June, 2019
17
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
November, 2018
1
October, 2017
1
October, 2019
Available data
460
bam
443
bigWig
401
tsv
44
fastq
31
bed narrowPeak
28
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
20
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
443
Homo sapiens
Biosample type
441
tissue
2
primary cell
Organ
623
pancreas
622
liver
569
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
443
AMP
Genome assembly (visualization)
441
hg19
440
GRCh38
Lab
443
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
443 results
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total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
2
3
1
1
renal pelvis
10
subcutaneous adipose tissue
6
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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