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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
18
DNase-seq
8
snATAC-seq
1
ATAC-seq
Assay category
60
DNA binding
27
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
18
June, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
78
bam
73
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
60
fastq
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
Organism
87
Homo sapiens
Biosample type
61
cell line
18
tissue
8
primary cell
Organ
940
pancreas
787
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
8
T1D
Genome assembly (visualization)
73
hg19
72
GRCh38
Lab
79
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bedMethyl
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
cell line
GM12878
60
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
primary cell
peripheral blood mononuclear cell
8
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