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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
180
single cell RNA-seq
2
small RNA-seq
Assay category
425
Transcription
273
DNA accessibility
254
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
43
April, 2018
43
May, 2020
42
July, 2018
33
May, 2022
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
2
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
243
bigWig
241
bam
241
fastq
241
tsv
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
425
Homo sapiens
Biosample type
1226
tissue
425
primary cell
79
cell line
47
in vitro differentiated cells
2
stem cell
Organ
162
epithelium
150
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
156
AMP
92
T1D
Genome assembly (visualization)
243
hg19
241
GRCh38
Lab
177
Klaus Kaestner, Upenn
154
AMP-T2D consortium
94
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
files.file_type!
bed bedMethyl
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
425 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
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