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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ATAC-seq
200
DNase-seq
57
snATAC-seq
3
FAIRE-seq
Assay category
1547
Transcription
1014
DNA binding
730
DNA accessibility
53
DNA methylation
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
82
August, 2021
81
May, 2022
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
16
January, 2021
11
May, 2023
10
April, 2020
8
July, 2019
4
March, 2020
3
January, 2018
3
March, 2019
2
August, 2017
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
729
Homo sapiens
Biosample type
429
tissue
228
primary cell
42
in vitro differentiated cells
31
cell line
Organ
163
kidney
112
pancreas
91
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
musculature of body
34
brain
32
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
631
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
390
hg19
388
GRCh38
Lab
517
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
46
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.file_type!
bed bedMethyl
fastq
assay_title!
Hi-C
BIOSAMPLE
ASSAY
730 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
48
7
coronary artery
36
2
liver
20
heart
18
+ See 58 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
monocyte
15
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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