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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
33
DNase-seq
Hi-C
6
total RNA-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
43
DNA binding
35
DNA accessibility
9
Transcription
2
DNA methylation
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
7
May, 2019
4
July, 2019
4
March, 2020
4
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
91
Homo sapiens
Biosample type
78
tissue
13
primary cell
Organ
931
pancreas
784
liver
680
connective tissue
510
epithelium
489
adipose tissue
382
heart
349
kidney
281
brain
229
vasculature
224
blood vessel
159
bone element
141
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
68
hg19
52
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bed bedMethyl
assay_title!
Hi-C
organ_slims!
skin of body
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
7
13
muscle of arm
17
islet of Langerhans
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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