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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
96
ChIP-seq
17
Hi-C
4
FAIRE-seq
3
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
109
DNA accessibility
96
DNA binding
17
3D chromatin structure
Target of assay
47
transcription factor
36
histone
36
histone modification
22
narrow histone mark
14
broad histone mark
13
control
5
RNA binding protein
2
chromatin remodeller
Date released
52
November, 2017
45
February, 2023
39
May, 2022
21
August, 2017
20
August, 2021
15
March, 2020
8
May, 2020
6
October, 2019
5
February, 2021
5
May, 2021
3
January, 2018
2
July, 2019
2
November, 2019
1
April, 2019
1
March, 2019
1
May, 2019
1
November, 2018
Available data
151
bed narrowPeak
140
bigWig
82
bam
74
fastq
40
bigBed narrowPeak
35
bed broadPeak
32
tagAlign
17
bedpe bed3+
17
hic
14
bigBed broadPeak
10
bed bed3
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
7
bed bedgraph
4
txt
3
tar
2
ibed
2
tsv
1
bedpe
Organism
227
Homo sapiens
Biosample type
123
tissue
primary cell
71
cell line
33
in vitro differentiated cells
Organ
96
liver
34
pancreas
27
eye
23
connective tissue
18
musculature of body
15
epithelium
4
adipose tissue
4
bone element
4
heart
4
skeleton
3
brain
2
kidney
1
blood
1
blood vessel
1
bodily fluid
1
limb
1
vasculature
Project
227
AMP
Genome assembly (visualization)
2576
hg19
GRCh38
5
hg18
Lab
160
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
files.file_type!
bed bedMethyl
biosample_type!
primary cell
assembly!
GRCh38
BIOSAMPLE
ASSAY
227 results
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ATAC-seq
ChIP-seq
Hi-C
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
islet of Langerhans
20
6
2
1
liver
20
8
1
retina
15
skeletal muscle tissue
1
13
1
pigmented layer of retina
12
+ See 17 more…
cell line
HepG2
65
1
1
EndoC_BH1
2
1
GM12878
1
in vitro differentiated cells
adipocyte
8
1
embryonic stem cell
6
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
immature adipocyte
2
+ See 6 more…
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