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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
939
ChIP-seq
163
DNase-seq
135
ATAC-seq
16
small RNA-seq
14
Hi-C
4
FAIRE-seq
1
pCHi-C
1
snATAC-seq
Assay category
1022
Transcription
939
DNA binding
303
DNA accessibility
14
3D chromatin structure
Target of assay
477
histone modification
476
histone
440
transcription factor
259
narrow histone mark
217
broad histone mark
85
recombinant protein
84
RNA binding protein
32
chromatin remodeller
17
control
5
other context
5
other post-translational modification
Date released
545
February, 2021
272
November, 2017
183
October, 2019
177
August, 2017
170
May, 2020
147
June, 2019
116
July, 2018
93
May, 2019
71
November, 2018
65
April, 2019
54
July, 2019
54
November, 2019
45
October, 2018
43
May, 2021
39
December, 2017
39
May, 2022
33
February, 2023
30
December, 2018
26
January, 2019
25
March, 2020
24
August, 2021
13
October, 2017
6
April, 2018
3
January, 2018
3
March, 2019
2
September, 2017
1
May, 2023
Available data
2166
bigWig
2160
bam
1179
bed narrowPeak
1023
tsv
844
bigBed narrowPeak
664
fastq
255
bed broadPeak
219
bigBed broadPeak
195
bed bed3+
122
tagAlign
13
hic
11
bedpe bed3+
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
txt
Organism
2273
Homo sapiens
Biosample type
1746
tissue
primary cell
530
cell line
in vitro differentiated cells
3
stem cell
Organ
597
liver
482
connective tissue
469
pancreas
424
adipose tissue
176
heart
142
brain
134
blood vessel
134
vasculature
103
kidney
96
limb
91
artery
70
bone element
64
epithelium
59
musculature of body
55
blood
55
bodily fluid
31
nerve
30
eye
18
ureter
14
spleen
12
skeleton
8
embryo
1
pituitary gland
Project
2273
AMP
6
T1D
Genome assembly (visualization)
2309
GRCh38
2279
hg19
1
hg18
Lab
2221
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
17
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
64
inconsistent ontology term
28
inconsistent control
1
audit script error
1
inconsistent replicate
Audit category:
37
missing controlled_by
Audit category:
34
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bed bedMethyl
biosample_type!
primary cell
in vitro differentiated cells
BIOSAMPLE
ASSAY
2279 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
FAIRE-seq
pCHi-C
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
42
2
1
liver
147
83
2
20
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
+ See 140 more…
cell line
HepG2
5
322
1
1
1
smooth muscle cell of the coronary artery
52
4
8
GM12878
54
1
EndoC_BH1
33
13
3
1
H1-hESC
8
+ See 7 more…
stem cell
hESC
3
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