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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
173
ChIP-seq
48
single cell RNA-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
253
Transcription
173
DNA binding
10
DNA accessibility
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
272
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
77
December, 2017
76
July, 2019
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
434
bigWig
416
bam
305
fastq
253
tsv
142
bed narrowPeak
42
bigBed narrowPeak
41
bed broadPeak
38
tagAlign
33
bed bed3+
15
bigBed broadPeak
bed bedMethyl
4
bigBed bedMethyl
Organism
430
Homo sapiens
Biosample type
293
tissue
94
primary cell
49
in vitro differentiated cells
Organ
312
pancreas
66
connective tissue
50
epithelium
19
liver
15
adipose tissue
13
musculature of body
Project
436
AMP
Genome assembly (visualization)
436
hg19
411
GRCh38
Lab
436
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
436 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
205
27
1
1
liver
18
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
primary cell
pancreatic beta cell
7
9
1
skeletal muscle myoblast
15
2
pancreatic alpha cell
7
7
1
pancreatic endocrine cell
12
pancreatic acinar cell
5
1
+ See 12 more…
in vitro differentiated cells
adipocyte
48
1
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