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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
112
total RNA-seq
61
ATAC-seq
30
single cell RNA-seq
12
DNase-seq
2
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
177
DNA binding
144
Transcription
73
DNA accessibility
2
3D chromatin structure
Target of assay
167
histone
167
histone modification
89
broad histone mark
78
narrow histone mark
8
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
29
August, 2017
28
June, 2019
15
July, 2018
15
July, 2019
11
September, 2018
10
April, 2018
6
November, 2020
3
February, 2021
3
November, 2017
2
June, 2018
1
October, 2019
Available data
381
bigWig
360
bam
188
bed narrowPeak
142
tsv
96
tagAlign
69
fastq
47
bigBed narrowPeak
26
bed broadPeak
26
bigBed broadPeak
15
bed bed3+
bed bedMethyl
4
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
397
Homo sapiens
Biosample type
1734
tissue
478
cell line
397
primary cell
277
in vitro differentiated cells
3
stem cell
Organ
epithelium
185
pancreas
33
connective tissue
30
vasculature
25
blood vessel
22
kidney
20
brain
17
vein
12
liver
11
musculature of body
9
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
217
AMP
180
T1D
Genome assembly (visualization)
397
hg19
311
GRCh38
Lab
215
Kyle Gaulton, UCSD
182
AMP-T2D consortium
Audit category:
33
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed bedMethyl
organ_slims!
epithelium
BIOSAMPLE
ASSAY
397 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic endocrine cell
23
skeletal muscle myoblast
15
1
2
osteoblast
5
2
1
1
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