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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
6
ATAC-seq
4
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
61
DNA binding
7
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
43
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
429
bam
412
bigWig
401
tsv
32
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bed bed3+
1
bedpe bed3+
1
bigBed broadPeak
Organism
475
Homo sapiens
Biosample type
473
tissue
2
primary cell
1
in vitro differentiated cells
Organ
882
pancreas
773
liver
646
connective tissue
477
epithelium
476
adipose tissue
350
heart
269
kidney
250
brain
227
vasculature
224
blood vessel
159
bone element
139
artery
89
limb
69
blood
69
bodily fluid
53
eye
49
musculature of body
43
nerve
36
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
476
AMP
Genome assembly (visualization)
413
hg19
409
GRCh38
Lab
476
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
files.file_type!
bed bedMethyl
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
476 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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