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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
254
Transcription
247
DNA binding
107
DNA accessibility
9
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
40
June, 2019
26
October, 2019
22
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
Available data
596
bigWig
574
bam
288
bed narrowPeak
252
tsv
226
fastq
102
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
618
Homo sapiens
Biosample type
1746
tissue
618
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
221
epithelium
185
pancreas
33
connective tissue
30
vasculature
25
blood vessel
22
kidney
20
brain
17
vein
12
liver
11
musculature of body
9
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
435
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
618
hg19
536
GRCh38
Lab
400
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
40
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
618 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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