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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
879
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
RNA microarray
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
RRBS
Assay category
1227
Transcription
879
DNA binding
293
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
616
histone modification
615
histone
318
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
253
August, 2017
238
October, 2019
228
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2022
63
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
11
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1907
bam
1772
bigWig
1074
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
73
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2452
Homo sapiens
Biosample type
2460
tissue
1041
primary cell
658
cell line
369
in vitro differentiated cells
7
stem cell
Organ
538
connective tissue
479
adipose tissue
472
pancreas
354
liver
279
heart
237
brain
228
kidney
127
blood vessel
127
vasculature
85
limb
74
bone element
69
artery
53
eye
46
musculature of body
41
nerve
22
spleen
20
lung
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2363
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1639
GRCh38
1557
hg19
Lab
2108
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
audit script error
6
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
bed bed3+
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
2460 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
RRBS
tissue
islet of Langerhans
292
50
68
6
7
4
3
1
4
1
adipose tissue
382
2
3
1
1
liver
167
142
20
1
1
1
1
3
kidney
49
27
75
64
6
1
1
heart left ventricle
3
35
2
18
1
1
2
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