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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
576
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
833
DNA binding
770
Transcription
462
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
224
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
19
November, 2018
17
February, 2021
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
1
August, 2022
1
December, 2019
1
January, 2018
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
617
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
73
txt
64
xls
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2113
Homo sapiens
Biosample type
2121
tissue
1040
primary cell
661
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
499
pancreas
485
adipose tissue
360
liver
306
heart
296
kidney
264
brain
132
blood vessel
132
vasculature
121
limb
79
musculature of body
74
bone element
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2024
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1365
GRCh38
1264
hg19
Lab
1769
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
audit script error
6
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
assay_title!
RNA microarray
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2121 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
70
292
68
6
1
7
4
3
1
4
liver
145
167
20
1
2
1
1
1
3
kidney
27
49
75
64
13
6
1
1
heart left ventricle
35
3
2
18
3
1
1
2
left cardiac atrium
40
18
1
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