Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
907
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
RRBS
Assay category
969
Transcription
Date released
386
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
50
August, 2021
39
May, 2021
31
July, 2019
26
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
9
February, 2023
9
March, 2020
1
May, 2023
Available data
867
tsv
843
bam
837
bigWig
97
fastq
55
txt
Organism
969
Homo sapiens
Biosample type
969
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
455
connective tissue
397
adipose tissue
283
pancreas
170
liver
bone element
50
kidney
19
eye
17
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
962
AMP
7
T1D
Genome assembly (visualization)
838
GRCh38
838
hg19
Lab
887
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
organ_slims!
bone element
BIOSAMPLE
ASSAY
969 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
liver
167
kidney
49
subcutaneous adipose tissue
7
+ See 42 more…
See all biosamples
Download