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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1023
total RNA-seq
832
ChIP-seq
221
ATAC-seq
174
single cell RNA-seq
172
DNase-seq
28
snATAC-seq
22
pCHi-C
16
small RNA-seq
15
Hi-C
10
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
RRBS
Assay category
1213
Transcription
832
DNA binding
425
DNA accessibility
15
3D chromatin structure
12
DNA methylation
Target of assay
572
histone modification
571
histone
304
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
279
August, 2017
223
August, 2021
214
October, 2019
193
May, 2020
159
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
May, 2019
60
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
35
March, 2020
23
October, 2017
21
February, 2020
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1816
bam
1699
bigWig
1059
tsv
880
bed narrowPeak
498
bigBed narrowPeak
377
fastq
238
tagAlign
207
bed broadPeak
199
bed bed3+
170
bigBed broadPeak
73
txt
64
xls
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2520
Homo sapiens
Biosample type
2529
tissue
991
primary cell
503
cell line
279
in vitro differentiated cells
9
stem cell
Organ
544
connective tissue
499
pancreas
485
adipose tissue
360
liver
306
heart
298
kidney
261
brain
132
blood vessel
vasculature
120
limb
78
musculature of body
74
bone element
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
Project
2432
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1735
GRCh38
1672
hg19
Lab
2177
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
audit.ERROR.category!
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
2529 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
WGBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
RRBS
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
4
adipose tissue
382
2
3
1
1
liver
167
145
20
1
2
1
1
1
3
kidney
49
27
75
64
13
6
1
1
heart left ventricle
3
35
2
18
3
1
1
2
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