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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
910
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
16
small RNA-seq
11
WGBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1229
Transcription
910
DNA binding
470
DNA accessibility
13
DNA methylation
6
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
241
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
63
July, 2019
51
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
37
March, 2020
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1910
bam
1775
bigWig
1080
tsv
986
bed narrowPeak
561
bigBed narrowPeak
381
fastq
238
tagAlign
213
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2741
Homo sapiens
Biosample type
2742
tissue
1074
primary cell
659
cell line
387
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
496
pancreas
486
adipose tissue
359
liver
303
heart
298
kidney
264
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2653
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1846
GRCh38
1740
hg19
1
hg18
Lab
2399
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
92
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
bedpe bed3+
BIOSAMPLE
ASSAY
2752 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
small RNA-seq
WGBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
1
1
4
adipose tissue
382
2
3
1
1
liver
167
145
20
1
2
1
1
3
kidney
49
27
75
64
13
6
1
1
bone element
84
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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