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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
123
DNA binding
109
Transcription
66
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
13
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
157
bigWig
132
bam
111
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
306
Homo sapiens
Biosample type
306
tissue
66
cell line
12
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
499
pancreas
486
adipose tissue
359
liver
306
heart
293
kidney
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
306
AMP
Genome assembly (visualization)
185
GRCh38
112
hg19
Lab
266
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
files.file_type!
bed bedMethyl
csv
BIOSAMPLE
ASSAY
306 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
1
1
2
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
1
1
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