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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
464
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
9
WGBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
2
RRBS
Assay category
1124
Transcription
464
DNA binding
429
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
381
histone
381
histone modification
192
broad histone mark
189
narrow histone mark
70
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
193
October, 2019
163
June, 2019
143
May, 2020
118
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
63
July, 2019
57
August, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
16
November, 2017
16
October, 2018
15
May, 2023
8
January, 2021
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2161
Homo sapiens
Biosample type
2163
tissue
582
primary cell
227
cell line
213
in vitro differentiated cells
6
stem cell
Organ
496
connective tissue
437
adipose tissue
306
heart
298
kidney
281
pancreas
208
liver
158
bone element
142
brain
132
blood vessel
132
vasculature
121
limb
73
artery
64
musculature of body
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2066
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1467
GRCh38
1362
hg19
Lab
1837
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
files.file_type!
bed bedMethyl
tagAlign
fastq
BIOSAMPLE
ASSAY
2163 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
MeRIP-seq
snDrop-seq
FAIRE-seq
RRBS
tissue
adipose tissue
382
3
1
islet of Langerhans
195
34
48
7
4
3
4
kidney
49
27
75
64
13
6
1
1
liver
167
8
20
1
1
1
1
2
bone element
84
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