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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
887
ChIP-seq
259
ATAC-seq
177
DNase-seq
167
single cell RNA-seq
27
snATAC-seq
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
RRBS
Assay category
1155
Transcription
887
DNA binding
467
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
179
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
279
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
63
July, 2019
59
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
22
October, 2017
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1883
bam
1756
bigWig
1075
tsv
970
bed narrowPeak
548
bigBed narrowPeak
353
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
txt
64
xls
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2563
Homo sapiens
Biosample type
2572
tissue
1078
primary cell
660
cell line
391
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
493
pancreas
486
adipose tissue
360
liver
306
heart
264
brain
236
kidney
132
blood vessel
132
vasculature
121
limb
78
musculature of body
73
artery
70
bone element
56
eye
43
nerve
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2475
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1829
GRCh38
1731
hg19
Lab
2283
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
txt
organ_slims!
spleen
BIOSAMPLE
ASSAY
2572 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
RRBS
tissue
islet of Langerhans
286
71
68
1
6
7
4
3
1
4
adipose tissue
382
2
3
1
1
liver
167
145
20
2
1
1
1
1
3
kidney
27
75
13
51
6
1
1
heart left ventricle
3
35
2
3
18
1
1
2
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