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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
84
RNA microarray
77
total RNA-seq
51
ATAC-seq
27
DNase-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
171
Transcription
123
DNA binding
78
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
150
February, 2021
92
August, 2021
57
April, 2019
44
February, 2023
40
May, 2024
27
June, 2019
21
May, 2019
13
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
215
bigWig
198
bam
181
bed narrowPeak
169
tsv
88
bigBed narrowPeak
88
txt
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3
3
bedpe bed3+
3
hic
Organism
464
Homo sapiens
Biosample type
464
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
499
pancreas
486
adipose tissue
360
liver
306
heart
298
kidney
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
464
AMP
Genome assembly (visualization)
251
GRCh38
182
hg19
Lab
424
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
84
inconsistent ontology term
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
464 results
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ChIP-seq
single cell RNA-seq
RNA microarray
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
bone element
84
heart left ventricle
35
18
3
2
3
1
1
2
left cardiac atrium
40
18
1
bone tissue
58
coronary artery
5
1
36
2
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