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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
2
ChIP-seq
2
pCHi-C
1
ATAC-seq
1
DNase-seq
1
total RNA-seq
Assay category
2
DNA accessibility
2
DNA binding
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
84
February, 2021
2
March, 2020
2
October, 2019
1
February, 2020
1
June, 2019
1
November, 2019
Available data
84
txt
4
bam
4
bed narrowPeak
3
bigWig
3
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
91
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
91
tissue
52
primary cell
1
stem cell
Organ
84
bone element
3
brain
1
adipose tissue
1
connective tissue
1
limb
1
musculature of body
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
91
AMP-T2D consortium
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
91 results
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RNA microarray
ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
total RNA-seq
tissue
bone element
84
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
brodmann area 43
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
insular gyrus
1
muscle of leg
1
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