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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
40
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
184
DNA binding
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
48
May, 2021
35
August, 2021
29
December, 2017
24
February, 2018
12
February, 2023
6
March, 2020
5
November, 2019
4
February, 2021
4
January, 2018
4
October, 2019
1
August, 2018
Available data
164
bam
132
bed narrowPeak
132
bigWig
126
fastq
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
239
Homo sapiens
Biosample type
964
tissue
533
primary cell
239
in vitro differentiated cells
191
cell line
8
stem cell
Organ
85
connective tissue
23
embryo
8
epithelium
3
pancreas
1
adipose tissue
1
liver
Project
239
AMP
Genome assembly (visualization)
153
hg19
123
GRCh38
4
hg18
Lab
190
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bed bedMethyl
bigBed narrowPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
adipocyte
67
6
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
definitive endodermal cell
8
1
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