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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
490
ChIP-seq
257
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
1227
Transcription
490
DNA binding
286
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
281
histone modification
280
histone
201
narrow histone mark
187
control
79
broad histone mark
24
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
257
August, 2017
229
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
66
May, 2022
61
July, 2019
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2148
Homo sapiens
Biosample type
2151
tissue
969
primary cell
377
in vitro differentiated cells
306
cell line
10
stem cell
Organ
535
connective tissue
476
adipose tissue
437
pancreas
311
liver
211
kidney
178
heart
158
bone element
148
brain
70
blood vessel
70
vasculature
53
eye
48
artery
41
musculature of body
37
limb
20
lung
17
nerve
16
skeleton
15
epithelium
10
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2054
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1253
hg19
1248
GRCh38
Lab
1839
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bed bedMethyl
bigBed narrowPeak
BIOSAMPLE
ASSAY
2151 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
tissue
islet of Langerhans
298
71
68
7
4
3
4
adipose tissue
382
1
2
1
1
liver
167
107
20
1
1
1
1
3
kidney
49
9
75
64
6
1
bone element
84
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