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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
34
ChIP-seq
18
small RNA-seq
9
Hi-C
6
ATAC-seq
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
34
DNA binding
9
3D chromatin structure
8
DNA accessibility
4
DNA methylation
Target of assay
28
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
August, 2022
Available data
116
bam
115
bigWig
65
tsv
37
bed narrowPeak
35
fastq
32
bigBed narrowPeak
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
120
Homo sapiens
Biosample type
70
tissue
28
cell line
22
primary cell
Organ
27
blood
27
bodily fluid
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
liver
10
vasculature
8
musculature of body
7
epithelium
7
kidney
7
spleen
4
limb
4
pancreas
3
artery
1
pericardium
Project
120
AMP
Genome assembly (visualization)
106
hg19
101
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent control
files.file_type!
bed bedMethyl
month_released!
August, 2022
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
ChIP-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
spleen
7
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 20 more…
cell line
GM12878
27
HepG2
1
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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