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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
44
total RNA-seq
18
small RNA-seq
8
Hi-C
6
ATAC-seq
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
120
DNA binding
65
Transcription
8
3D chromatin structure
8
DNA accessibility
4
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
202
bam
182
bigWig
104
bed narrowPeak
99
bigBed narrowPeak
65
tsv
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
205
Homo sapiens
Biosample type
178
tissue
27
primary cell
Organ
60
blood vessel
60
vasculature
44
brain
38
heart
17
connective tissue
15
musculature of body
12
adipose tissue
12
epithelium
12
kidney
11
limb
9
liver
8
artery
6
pancreas
1
pericardium
Project
205
AMP
Genome assembly (visualization)
173
hg19
167
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
1
angular gyrus
13
+ See 23 more…
primary cell
kidney epithelial cell
5
1
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 14 more…
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