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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
9
ATAC-seq
8
Hi-C
4
WGBS
2
FAIRE-seq
Assay category
121
Transcription
11
DNA accessibility
8
3D chromatin structure
4
DNA methylation
Target of assay
3
control
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
bigWig
82
bam
65
tsv
41
fastq
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
144
Homo sapiens
Biosample type
81
primary cell
63
tissue
Organ
26
epithelium
23
pancreas
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
9
liver
8
musculature of body
7
kidney
4
limb
3
artery
1
pericardium
Project
85
AMP
59
HPAP
Genome assembly (visualization)
76
hg19
74
GRCh38
Lab
85
AMP-T2D consortium
59
Klaus Kaestner, Upenn
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
Hi-C
WGBS
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic beta cell
1
1
+ See 17 more…
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 19 more…
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